Publications

A Rapid, Simple, and Economical Method for the Isolation of Ribosomes and Translational Machinery for Structural and Functional Studies

Erath J, Kemper D, Mugo E, Jacoby A, Valenzuela E, Jungers CF, Beatty WL, Hashem Y, Jovanovic M, Djuranovic S, Pavlovic Djuranovic S. Nat Commun. 2025 Aug 5;16(1):7185. doi: 10.1038/s41467-025-62314-8. PMID: 40764614; PMCID: PMC12325604.

Accelerating the Future of Oncology Drug Development: The Role of Consortia in the Delivery of Precision Oncology Early Phase Clinical Trials

Liu J, Farrow M, Seymour L, Desai J, Loong HH, Ivy P, Koyoma T, Cook N, Blagden S, Garralda E, Massard C, Tolcher AW, Adashek JJ, Zhang L, Zhao S, Shen L, Kurzrock R, El-Deiry WS, Subbiah V, Joshua AM. J Clin Oncol. 2025 Feb 20;43(6):735-747. doi: 10.1200/JCO-24-01534. Epub 2025 Jan 14. PMID: 39808749.

Acquired Resistance to Molecularly Targeted Therapies for Cancer

Stubbs NM, Roady TJ, Schwermann MP, Eteshola EO, MacDonald WJ, Purcell C, Ryspayeva D, Verovkina N, Tajiknia V, Ghandali M, Voong V, Lannigan AJ, Raufi AG, Lawler S, Holder SL, Carneiro BA, Cheng L, Safran HP, Graff SL, Dizon DS, Mani SA, Seyhan AA, Sobol RW, Wong ET, Chen CC, Gokaslan Z, Taylor MS, Rivers BM, El-Deiry WS. Cancer Drug Resist. 2025 Jun 5;8:27. doi: 10.20517/cdr.2024.189. PMID: 40510029; PMCID: PMC12159602.

Artemisinin Partial Resistance Mutations in Zanzibar and Tanzania Suggest Regional Spread and African Origins, 2023

Connelly SV, Muller JG, Ali M, Ngasala BE, Hassan W, Mohamed B, Thwai KL, Sadler JM, Marglous J, Fola AA, Zacharia A, Shija SJ, Mohammed S, C Msolo D, Said H, Peter EE, Odas M, Rutha IJ, Nwange M, Naire K, Ruybal-Pesántez S, Verity R, Crudale R, Goel V, Choloi BB, Björkman A, Bailey JA, Lin JT, Juliano JJ. J Infect Dis. 2026 Feb 18;233(2):e491-e495. doi: 10.1093/infdis/jiaf431. PMID: 40802860; PMCID: PMC13017645.

Assessment of Ex Vivo Antimalarial Drug Efficacy in African Plasmodium Falciparum Parasite Isolates, 2016-2023: A Genotype-Phenotype Association Study

Rosado J, Fola AA, Cojean S, Sarrasin V, Coppée R, Bailly J, Zaffaroulah R, Bouzayene A, Cicéron L, Houzé L, Crudale R, Musset L, Thellier M, Pradines B, Clain J, Bailey JA, Houzé S; Investigation Study Group. EBioMedicine. 2025 Aug;118:105835. doi: 10.1016/j.ebiom.2025.105835. Epub 2025 Jul 9. PMID: 40639048; PMCID: PMC12274720.

Barriers to Achieving Graduated Responsibility: Preparing Pathology Residents for Independent Practice

Bryant BH, Puligandla B, Gosnell HL, Johnson K, Barak S, Berg MP, Chahar S, Childs JM, Karp JK, Lofgreen A, McCloskey CB, Knollmann-Ritschel BEC, White KL, Black-Schaffer WS. Academic Pathology. 2025 Sep 22;12(4):100221. doi: 10.1016/j.acpath.2025.100221. PMID: 41049715; PMCID: PMC12493152.

Comparison of Nanopore with Illumina Whole Genome Assemblies of the Epstein-Barr Virus in Burkitt Lymphoma

Kim IE Jr, Fola AA, Puig E, Maina TK, Hui ST, Ma H, Zuckerman K, Agwati EO, Leonetti A, Crudale R, Luftig MA, Moormann AM, Oduor C, Bailey JA. Sci Rep. 2025 Mar 31;15(1):10970. doi: 10.1038/s41598-025-94737-0. PMID: 40164811; PMCID: PMC11958722.

Continued Positive Job Search Experience for New Pathologists Seeking First Employment During the COVID-19 Pandemic (2020-2022)

Karp JK, Lofgreen A, Johnson K, George MR, Barak S, Bryant BH, Berg MP, Childs JM, Knollman-Ritschel BEC, Prieto VG, White KL, McCloskey CB. Arch Pathol Lab Med. 2025 Jan 1;149(1):14-19. doi: 10.5858/arpa.2023-0408-CP. PMID: 38528091.

End Points for the Next-Generation Bladder-Sparing Perioperative Trials for Patients With Muscle-Invasive Bladder Cancer

Necchi A, Galsky MD, Dizman N, Aggen DH, Agarwal N, Al-Ahmadie H, Apolo AB, Ballas L, Bangs R, Black PC, Brausi M, Brembilla G, Cheng L, Chiti A, Cimadamore A, Colecchia M, Daneshmand S, Di Stasi S, Efstathiou JA, Filicevas A, Geynisman DM, Grivas P, Gupta S, Iasonos A, James ND, Lerner SP, Loriot Y, Makaroff LE, Maluf F, Moschini M, Ostrovnaya I, Pal SK, Plimack ER, Prakash G, Psutka SP, Rosenberg JE, Sadeghi S, Schmidt B, Schwartz LH, Sonpavde GP, St Laurent MP, Ye D, Spiess PE, Kamat AM. J Clin Oncol. 2025 Nov 10;43(32):3536-3544. doi: 10.1200/JCO-25-01608. Epub 2025 Sep 11. PMID: 40934451; PMCID: PMC12431632.

Genetic Metrics Decode Plasmodium Falciparum Diversity: Complexity of Infection, Parasite Connectivity, and Transmission Intensity in Mainland Tanzania’s Diverse Regions

Pereus D, Fola AA, Bakari C, Seth MD, DeFeo R, Lyimo BM, Mandara CI, Madebe RA, Mbata D, Popkin-Hall ZR, Moshi R, Mbwambo RB, Mbwambo D, Aaron S, Lusasi A, Lazaro S, Giesbrecht DJ, Kulohoma B, Juliano JJ, Bailey JA, Juma G, Mobegi VA, Ishengoma DS. Front Genet. 2026 Apr 29;17:1695073. doi: 10.3389/fgene.2026.1695073. PMID: 42137244; PMCID: PMC13168215.

Genitourinary Pathology Society and International Society of Urological Pathology White Paper on Defining Indolent Prostate Cancer: Call for a Multidisciplinary Approach

Shah RB, Paner GP, Cheng L, De Marzo AM, Magi-Galluzzi C, Varma M, Zhou M, Amin A, Amin MB, Aron M, Cunha IW, Epstein JI, Fine SW, Haider A, Iczkowski KA, Kench JG, Kunju LP, Mohanty SK, Montironi R, Netto GJ, Pan CC, Rao P, Srigley JR, Sauter G, Tan PH, Tsuzuki T, van der Kwast TH, van Leenders GJ, Kristiansen G. Eur Urol. 2025 Jul;88(1):8-10. doi: 10.1016/j.eururo.2025.02.029. Epub 2025 Mar 17. PMID: 40102113.

Heterogeneity in Cancer

MacDonald WJ, Purcell C, Pinho-Schwermann M, Stubbs NM, Srinivasan PR, El-Deiry WS. Cancers (Basel). 2025 Jan 28;17(3):441. doi: 10.3390/cancers17030441. PMID: 39941808; PMCID: PMC11816170.

Histopathologic Evidence of Intimal Hyperplasia in Carotid Artery Webs Associated with Stroke

Khan F, Nobee A, Lewis S, Donahue JE, Yaghi S. Free Neuropathol. 2025 Aug 26;6:16. doi: 10.17879/freeneuropathology-2025-7139. PMID: 40873957; PMCID: PMC12379831.

Identification of Substituted 4-Aminocinnolines as Broad-Spectrum Antiparasitic Agents

Spaulding A, Sharma A, Giardini MA, Hoffman B, Bernatchez JA, McCall LI, Calvet CM, Ackermann J, Souza JM, Thomas D, Millard CC, Devine WG, Singh B, Silva EM, Leed SE, Roncal NE, Penn EC, Erath J, Kumar G, Sepulveda Y, Garcia A, Rodriguez A, El-Sakkary N, Sciotti RJ, Campbell RF, Momper JD, McKerrow JH, Caffrey CR, Siqueira-Neto JL, Pollastri MP, Mensa-Wilmot K, Ferrins L. ACS Infect Dis. 2025 Mar 14;11(3):584-599. doi: 10.1021/acsinfecdis.4c00666. Epub 2025 Feb 12. PMID: 39936822; PMCID: PMC11915375.

Identifying Immunomodulatory Subpopulations of Adipose Stromal Vascular Fraction and Stem/Stromal Cells Through Single-Cell Transcriptomics and Bulk Proteomics

Parsons AM, Ahsan N, Darling EM. Stem Cell Rev Rep. 2025 Jun;21(5):1484-1500. doi: 10.1007/s12015-025-10889-6. Epub 2025 May 14. PMID: 40366552; PMCID: PMC12316552.

IGV-001 Cellular Immunotherapy for Newly Diagnosed Glioblastoma: Overcoming the Logistic Challenge

Wong ET, Cielo D, Svokos K, Doberstein C, Sampath P, Donahue JE, Punsoni M, Rodrigues N, Rothell F, Edwards R, Wang E, Riccelli T, Chuck C, Shaaya EA, Sastry R, Ali R, Shao B, Abdulrazeq H, Sun FW, Feler J, Santos Fontánez SE, Nieves NA, Dobertsein C, Dailey J, Yu C, Sarangi S, Elinzano H, Boxerman JL, Yu E, Safran H, Seyhan AA, El-Deiry WS, Keith S, Gokaslan ZL, Chen CC, Malik A. Front Oncol. 2025 Mar 18;15:1556450. doi: 10.3389/fonc.2025.1556450. PMID: 40171253; PMCID: PMC11959700.

Intratumoral Mycobiome Heterogeneity Influences the Tumor Microenvironment and Immunotherapy Outcomes in Renal Cell Carcinoma

Mou W, Deng Z, Zhu L, Jiang A, Lin A, Xu L, Deng G, Huang H, Guo Z, Zhu B, Wu S, Yang T, Wang L, Liu Z, Wei T, Zhang J, Cheng L, Huang H, Chen R, Shao Y, Cheng Q, Wang L, Yuan S, Luo P. Sci Adv. 2025 Apr 11;11(15):eadu1727. doi: 10.1126/sciadv.adu1727. Epub 2025 Apr 9. PMID: 40203108; PMCID: PMC11980860.

Low-Grade Non-Muscle-Invasive Bladder Cancer: Molecular Landscape, Treatment Strategies and Emerging Therapies

Wen L, Miyagi H, Spiess PE, Yu A, Mendelsohn CL, Tan WS, Psutka SP, Lerner SP, Cheng L, Dyrskjøt L, Meeks JJ, Shariat SF, Gontero P, Pradere B, Steinberg GD, Kamat AM, Li R. Nat Rev Urol. 2025 Dec;22(12):846-861. doi: 10.1038/s41585-025-01072-0. Epub 2025 Sep 10. PMID: 40931081.

Molecular and Immune Landscape of Tumours in Geriatric Patients with Non-Small Cell Lung Cancer, Melanoma and Renal Cell Carcinoma

Choucair K, Elliott A, Oberley MJ, Walker P, Salama AK, Saeed A, Mamdani H, Uprety D, El-Deiry WS, Beltran H, Liu SV, Kim C, Naqash AR, Lou E, Chen L, Saeed A. BMJ Oncol. 2025 Jan 16;4(1):e000551. doi: 10.1136/bmjonc-2024-000551. PMID: 39885940; PMCID: PMC11751915.

National Genomic Profiling of Plasmodium Falciparum Antimalarial Resistance in Zambian Children Participating in the 2018 Malaria Indicator Survey

Fola AA, Ciubotariu II, Dorman J, Mwenda MC, Mambwe B, Mulube C, Kasaro R, Hawela MB, Hamainza B, Miller JM, Bailey JA, Moss WJ, Bridges DJ, Carpi G. Sci Rep. 2026 Apr 30;16(1):20113. doi: 10.1038/s41598-026-45996-y. PMID: 42062354; PMCID: PMC13324043.

O Blood Usage Trends in the Pediatric Population 2015-2019: A Multi-Institutional Analysis

Annen K, Andani S, Bosma G, Abbott D, Arinsburg S, Nguyen F, Ibeh N, Nicol K, Hernandez P, Jackups R, Delaney M, Bahar B, Mo Y, Alexander B, Noland DK, Wong TE, Andrews J. Transfusion. 2025 Apr;65(4):676-683. doi: 10.1111/trf.18225. Epub 2025 Mar 28. PMID: 40151072; PMCID: PMC12057999.

Perceived Gaps in Preparation for Pathology Residency and Opportunities for Improvement

Knollmann-Ritschel BEC, Karp JK, Barak S, Childs JM, Johnson K, Lofgreen A, Berg MP, Chahar S, Gosnell HL, McCloskey CB, Puligandla B, White KL, Bryant B. Academic Pathology. 2025 Oct 26;12(4):100223. doi: 10.1016/j.acpath.2025.100223. PMID: 41216342; PMCID: PMC12596605.

Presentation of Extended-Spectrum Beta-Lactamase-Producing Escherichia Coli Sequence Type 58 Strain (ST58) with Solid Subcutaneous Mass and Hypermucoid Phenotype: A Case Report

Carabaño M, Jang E, Charla S, Nau G, Geffert S, Gamsiz Uzun ED, Hong T. Ann Clin Lab Sci. 2025 Jul;55(4):590-595. PMID: 40962459.

Reappraisal of Neuroendocrine Tumor Classification of the Prostate Gland: Translating Molecular Insights into Clinical Practice

Lobo A, Cheng L. Endocrine Patholology. 2025 Jul 23;36(1):28. doi: 10.1007/s12022-025-09871-2. PMID: 40699451.

Seeing Is Believing-Plasmodium Falciparum Translation in Action

Erath J, Pavlovic Djuranovic S. Structure. 2025 Nov 6;33(11):1818-1819. doi: 10.1016/j.str.2025.10.008. PMID: 41202797.

Selection of Force Sensors for In Situ Measurement of Neotissue Microenvironments

Rodriguez Navas M, Darling EM. Tissue Eng Part A. 2025 Feb;31(3-4):164-173. doi: 10.1089/ten.tea.2024.0192. Epub 2024 Oct 25. PMID: 39453885; PMCID: PMC11971539.

Signaling Pathway Dysregulation in Breast Cancer

Ryspayeva D, Seyhan AA, MacDonald WJ, Purcell C, Roady TJ, Ghandali M, Verovkina N, El-Deiry WS, Taylor MS, Graff SL. Oncotarget. 2025 Mar 13;16:168-201. doi: 10.18632/oncotarget.28701. PMID: 40080721; PMCID: PMC11906143.

Studies of Slc30a10 Deficiency in Mice Reveal That Intestinal Iron Transporters Dmt1 and Ferroportin Transport Manganese

Prajapati M, Zhang JZ, Chong GS, Chiu L, Mercadante CJ, Kowalski HL, Antipova O, Lai B, Ralle M, Jackson BP, Punshon T, Guo S, Aghajan M, Bartnikas TB. Cell Mol Gastroenterol Hepatol. 2025;19(7):101489. doi: 10.1016/j.jcmgh.2025.101489. Epub 2025 Feb 28. PMID: 40024532; PMCID: PMC12264432.

The Role of Liquid Biopsy in the Management of Patients with Genitourinary Malignancies

Maughan BL, Dyrskjøt L, Grivas P, Alcaraz A, Antonarakis ES, Bilen MA, Bivalacqua T, Cooperberg MR, Cheng L, Gupta S. Eur Urol. 2025 Nov;88(5):449-461. doi: 10.1016/j.eururo.2025.07.016. Epub 2025 Aug 18. PMID: 40829964.

Trail Agonists Rescue Mice from Radiation-Induced Lung, Skin, or Esophageal Injury

Strandberg J, Louie A, Lee S, Hahn M, Srinivasan P, George A, De La Cruz A, Zhang L, Hernandez Borrero L, Huntington KE, De La Cruz P, Seyhan AA, Koffer PP, Wazer DE, DiPetrillo TA, Graff SL, Azzoli CG, Rounds SI, Klein-Szanto AJ, Tavora F, Yakirevich E, Abbas AE, Zhou L, El-Deiry WS. J Clin Invest. 2025 Jan 14;135(5):e173649. doi: 10.1172/JCI173649. PMID: 39808500; PMCID: PMC11870730.

Trail Receptor Agonist TLY012 in Combination with PD-1 Inhibition Promotes Tumor Regression in an Immune-Competent Mouse Model of Pancreatic Ductal Adenocarcinoma

Louie AD, Huntington KE, Lee Y, Mompoint J, Wu LJ, Lee S, Miner TJ, El-Deiry WS. Am J Cancer Res. 2025 Jan 15;15(1):286-298. doi: 10.62347/ROAT5658. PMID: 39949937; PMCID: PMC11815385.

Pathology and Laboratory Medicine